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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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10x CellPlex: QC shouldn't run single library analysis for multiplexing capture Fastqs #795

Closed pjbriggs closed 2 years ago

pjbriggs commented 2 years ago

There is a bug in the QC pipeline for 10xGenomics CellPlex data, where single library analysis (using cellranger count) is run for both the "gene expression" and "multiplexing capture" Fastqs - in fact this is only valid for the gene expression data.