fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Skip single library analyses in QC for CellPlex data when config file is absent #797

Closed pjbriggs closed 2 years ago

pjbriggs commented 2 years ago

PR which addresses issue #795 by updating the QC pipeline (qc.pipeline) to explicitly skip single library analyses for all 10x Genomics CellPlex samples when the 10x_multi_config.csv file is not present.

Without this fix the analyses are run using for all Fastqs i.e. both the gene expression and the multiplex capture data.