run_qc.py: always generate HTML report

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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run_qc.py: always generate HTML report #804

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Update run_qc.py so that default behaviour is to always generate an HTML report, even if the QC pipeline fails.

Previously the --force option was required in order to get this behaviour, however with this change --force is now redundant. The option is still supported but does nothing if specified.