Fix bug in TSV with collated insert sizes in QC pipeline

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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Fix bug in TSV with collated insert sizes in QC pipeline #820

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Fixes a bug in the QC pipeline (qc/pipeline.py) when collating the insert sizes from Picard's collectInsertSizeMetrics function, where the TSV file produced by the pipeline didn't use the correct BAM file names (in fact the same name was used for all metrics).