Update the documentation for the 'setup' command

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Update the documentation for the setup command:

Document the new -r/--run-number option
Update the sample sheet acquisition to include -s as an alternative shorthand for the --sample-sheet option.