fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Add support for 10xGenomics fixed RNA profiling ("Flex") #830

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Adds support for 10x Genomics fixed RNA profiling ("Flex") data.

Details of the fixed RNA profiling can be found in the CellRanger documentation:

The updates include a new QC protocol 10x_Flex which is automatically used when the single cell platform is 10xGenomics Chromium 3' and the library type is Flex.