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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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'run_qc' command: refactor how indexes are fetched from configuration #842

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Refactor the run_qc command handler (in commands/run_qc.py) to make use of the fetch_reference_data function from the settings module (introduced in PR #840) for fetching the indexes and reference data from the configuration.