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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Refactor 'reportqc.py' to move code into 'cli' submodule #846

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Refactors the reportqc.py utility used in the QC pipeline to put the main code into the cli module.

Also removes the previously deprecated command line options.