fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Implement option in 'transfer_fastqs.py' to copy subsets of Fastqs #849

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Implements a new --filter option in the transfer_fastqs.py utility (cf the --filter option already implemented in the manage_fastqs.py utility), to allow a subset of Fastqs to be copied by matching the supplied glob-style pattern.

(The motivation to implement this feature comes from the requirement to only transfer the R1 Fastqs for a project, however other use cases should also be covered.)