Implement '10x_Visium_FFPE' QC protocol

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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Implement '10x_Visium_FFPE' QC protocol #850

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Implement a new protocol specifically for 10x Genomics Visium FFPE Spatial RNA-seq data, which specifies that biological data is only in the first 50 bp of the R2 reads (similar to the 10x Genomics Flex protocol previously implemented in PR #834).