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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Fix attribute extraction from sequence length files for non-canonical Fastq names #851

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Fixes the extraction of Fastq name attributes from the sequence length QC output files (in the QCOutputs._collect_seq_lens method in the qc/outputs module) so that attribute extraction (specifically the read number) is handled correctly for non-canonical Fastq names (such those from the SRA).