Closed pjbriggs closed 11 months ago
Updates code for generating template cellranger multi CSV config files to add fields for 10x Genomics single cell immune profiling (V(D)J) data as per the documentation at https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/using/multi.
cellranger multi
Specifically:
[vdj]
VDJ-B
VDJ-T
[libraries]
(Additionally the cmo-set field is also added to the template in the [gene-expression] section, to allow custom CMO references to be added - see https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/multi#cmoreference)
cmo-set
[gene-expression]
The CellrangerMultiConfigCsv class is also updated to enable the V(D)J reference file to be extracted from the file and returned via a new property vdj_reference.
CellrangerMultiConfigCsv
vdj_reference
Updates code for generating template
cellranger multiCSV config files to add fields for 10x Genomics single cell immune profiling (V(D)J) data as per the documentation at https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/using/multi.Specifically:
[vdj]sectionVDJ-BandVDJ-Tas possible library types in[libraries]section(Additionally the
cmo-setfield is also added to the template in the[gene-expression]section, to allow custom CMO references to be added - see https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/multi#cmoreference)The
CellrangerMultiConfigCsvclass is also updated to enable the V(D)J reference file to be extracted from the file and returned via a new propertyvdj_reference.