fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Allow biological data samples to be explicitly defined for QC pipeline #866

Closed pjbriggs closed 1 year ago

pjbriggs commented 1 year ago

Updates the analysis project metadata to include a new Biological samples field, which can be used to list samples which contain biological data. If this field is populated then samples which don't appear are assumed to have non-biological data.

This information is used in the QC pipeline and verification to determine whether the mapped metrics should be applied to each sample (building on the existing mechanism used to implicitly distinguish biological and non-biological samples from the cellranger multi config files).