analyse_barcodes.py: prevent multiple counting of barcodes when Fastqs supplied on command line

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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analyse_barcodes.py: prevent multiple counting of barcodes when Fastqs supplied on command line #874

Closed pjbriggs closed 10 months ago

pjbriggs commented 1 year ago

Update analyse_barcodes.py utility to automatically group Fastqs supplied on the command line and discard all but one of each group (e.g. if R1 and R2 Fastqs are supplied then only one of this pair will be used for barcode analysis). This should mean that barcodes are not double or triple counted when the utility is used in this way.

This PR is intended to address issue #654.