Proposal to add options to the make_fastqs command to trim reads at the Fastq generation stage, as an alternative to explicitly setting the bases mask.
For example:
auto_process.py make_fastqs --read1=59 ...
would update the bases mask so that R1 would be trimmed to 59 bases (e.g. y59n...).
Proposal to add options to the
make_fastqscommand to trim reads at the Fastq generation stage, as an alternative to explicitly setting the bases mask.For example:
would update the bases mask so that R1 would be trimmed to 59 bases (e.g.
y59n...).