Add support for 10x Genomics CytAssist Visium spatial RNA-seq platform

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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Closed pjbriggs closed 11 months ago

pjbriggs commented 11 months ago

Updates the pipeline to recognise the 10x Genomics CytAssist Visium spatial RNA-seq platform:

setup_analysis_dirs: treats 10xGenomics CytAssist Visium projects as a variant of Visium data when setting up an analysis directory;
qc/protocols: treats 10xGenomics CytAssist Visium projects as a variant of Visium data when determining which QC protocol should be applied