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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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QC pipeline: only execute GTF to BED conversion if output file doesn't exist #901

Closed pjbriggs closed 11 months ago

pjbriggs commented 11 months ago

Currently the GTF to BED conversion task in the QC pipeline always runs even if the output already exists. The proposal is only to update the pipeline so to only run the task if the output BED file isn't found.