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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Fix reporting path to analysis directory in 'report' command #908

Closed pjbriggs closed 8 months ago

pjbriggs commented 8 months ago

Fixes a bug in the report command, when the stored value for the path to the analysis directory is out of date (e.g. because the directory was relocated or archived without the metadata being updated). In these cases, prior to this fix the path would be reported as the (incorrect) stored version.

The fix is to report the path as the actual location directory of the analysis directory (ignoring the stored value).