Implements a new QC protocol 10x_Visium_FFPE_PEX in qc/protocols for 10x Genomics CytAssist Visium protein expression (PEX) data.
The new protocol is minimal (only runs basic QC metrics) and is automatically selected by the determine_qc_protocol function when the library type for a project is set to FFPE Spatial PEX and the platform is either 10xGenomics Visium and 10xGenomic CytAssist Visium platforms.
The existing 10x_Visium_FFPE protocol has not been changed (aside from extending the description text). It is now also selected by determine_qc_protocol when the library type is set to FFPE Spatial GEX.
Implements a new QC protocol
10x_Visium_FFPE_PEXinqc/protocolsfor 10x Genomics CytAssist Visium protein expression (PEX) data.The new protocol is minimal (only runs basic QC metrics) and is automatically selected by the
determine_qc_protocolfunction when the library type for a project is set toFFPE Spatial PEXand the platform is either10xGenomics Visiumand10xGenomic CytAssist Visiumplatforms.The existing
10x_Visium_FFPEprotocol has not been changed (aside from extending the description text). It is now also selected bydetermine_qc_protocolwhen the library type is set toFFPE Spatial GEX.