Fix bug with splitting Fastqs by lane when QC pipeline is re-run

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

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Fix bug with splitting Fastqs by lane when QC pipeline is re-run #927

Closed pjbriggs closed 9 months ago

pjbriggs commented 9 months ago

Fixes a bug in the QC pipeline when rerunning the QC on a project where Fastqs have been split by lanes and the outputs from the SplitFastqsByLane task (in qc/pipeline) already exist. Without the fix, these existing split Fastqs were ignored and the splitting was performed again unnecessarily.

The fix corrects the detection of the existing split Fastqs and only runs the splitting for those that are missing.