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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Fix broken unit test for 'setup' command for NovaSeq data #929

Closed pjbriggs closed 7 months ago

pjbriggs commented 7 months ago

Fixes a bug in the unit test for the setup command when using mock NovaSeq data produced by the MockIlluminaRun class from the bcftbx.mock library.

The bug is due to a fix to the class in this PR:

https://github.com/fls-bioinformatics-core/genomics/pull/215

which updates the expected bases mask for these data. The fix here is to also update the expected bases mask in the unit test.