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fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Update Fastq generation for compatibility with Spaceranger 3.0.0 #959

Closed pjbriggs closed 2 months ago

pjbriggs commented 2 months ago

The Fastq generation pipeline needs updating for compatibility with Spaceranger 3.0.0 (used for Visium data):