Updates the QC pipeline to add support for infer_experiment.py (from the RSeQC package) as an explicit QC module (where previously it was implied whenever BAM files were required to generate a specific metric).
infer_experiment.py is now used to generate the strand-specificity metrics (following the removal of the strandedness module from the QC protocols #971), however without this update it is not possible to directly request these metrics.
Updates the QC pipeline to add support for
infer_experiment.py(from the RSeQC package) as an explicit QC module (where previously it was implied whenever BAM files were required to generate a specific metric).infer_experiment.pyis now used to generate the strand-specificity metrics (following the removal of thestrandednessmodule from the QC protocols #971), however without this update it is not possible to directly request these metrics.