Updates recommended metadata values to assign for different flavours of 10x Genomics Visium data and reimplements how these are handled for determining which QC protocol to use.
Changes include:
Refactoring the determine_qc_protocol function (in qc/protocols) to move the internals to a new intermediate function determine_qc_protocol_from_metadata
Updates recommended metadata values to assign for different flavours of 10x Genomics Visium data and reimplements how these are handled for determining which QC protocol to use.
Changes include:
determine_qc_protocolfunction (inqc/protocols) to move the internals to a new intermediate functiondetermine_qc_protocol_from_metadataCloses #981.