Fix bug when truncating read lengths in bases mask with missing I5 index in sample sheet

fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

Other

9 stars 6 forks source link

Fix bug when truncating read lengths in bases mask with missing I5 index in sample sheet #983

Closed pjbriggs closed 5 days ago

pjbriggs commented 5 days ago

Fixes a bug in the get_bases_mask function (in bcl2fastq/utils) when truncated R1 and/or R2 reads are requested and the sample sheet also has an empty I5 sequence (for which the matching part of the mask should be converted to 'n's).