fls-bioinformatics-core / auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
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Add expected outputs from protocol to QC reporting #988

Closed pjbriggs closed 1 month ago

pjbriggs commented 1 month ago

Updates the QC reporting to add metrics from expected outputs of the QC protocol to the lists of summary fields and attributes (even if they're not present), in addition to ones from the actual detected outputs.

Requires updates to the QCProtcol class (in qc/protocols) to add new properties qc_module_names and expected_outputs.

Closes #666.