Recent vaccine strains - Githubissues

flu-crew / octoFLU

Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.

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Closed tkanderson closed 5 years ago

tkanderson commented 5 years ago

We need to include A/Brisbane/02/2018 as newest pdm09 strain.

See "WHO Addendum to the recommended composition of influenza virus vaccines for use in the 2019–2020 northern hemisphere influenza season."

More generally, we need to work out an approach to continuously update the reference set; potentially

tkanderson commented 5 years ago

Recent vaccine strains were added; internal genes and NA are labeled as "pdm," and the HA as pdm-vaccine/1A.3.3.2-vaccine.