update wiki with sample trees and examples

flu-crew / octoFLU

Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.

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update wiki with sample trees and examples #6

Closed tkanderson closed 5 years ago

tkanderson commented 5 years ago

Wiki currently using old example files that are not in the repo. Update and test for the nn_classifier.R, pipeline.sh, and for the merge.R sections.

tkanderson commented 5 years ago

Wiki updated with an example PB2 tree and steps to analyze the data. mergeGC.R remains a work in progress, but we can address at a later date (there is an existing issue on expanding the tool to do this).