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flyark / AFM-LIS

Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
https://www.flyrnai.org/tools/fly_predictome
MIT License
44 stars 6 forks source link

alphafold3 archive not saving metrics #3

Closed isi1000 closed 6 months ago

isi1000 commented 6 months ago

Hi! in the alphafold3 version of the notebook it calcules and plot the results perfectly but I can't get the raw results, so for example I am unable to see what is the LIA score, only the cLIA ones. I don't know if it is my problem or a problem of the script; I am using alphafold3_lis_contact_v0.14.ipynb

Thank you in advance!

flyark commented 6 months ago

Hi,

I've been thinking how to make the output csv with results instead of simply plotting.

I am working on making new note that can make csv with all the results in addition to plotting the data. It seems working well but I need to check a little more. I will upload the updated note soon.

Ah-Ram

On May 17, 2024, at 8:16 AM, Isidro Sobrino Sánchez @.***> wrote:

Hi! in the alphafold3 version of the notebook it calcules and plot the results perfectly but I can't get the raw results, so for example I am unable to see what is the LIS score. I don't know if it is my problem or a problem of the script; I am using alphafold3_lis_contact_v0.14.ipynb

Thank you in advance!

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flyark commented 6 months ago

Please check alphafold3_lis_contact_v0.15.ipynb and let me know whether it's working well.