I am getting the following errors while trying to assemble a new dataset on a system with 64 CPUs and 250 GB memory:
Error, command: /home/user/Bridger_r2014-12-01/src/PathSearch -i comp48 -k 25 --pair_end --double_stranded_mode >/data/user/rna-seq/trimmed/rna-seq_all/transcripts/comp48.transcripts.fasta died with ret 35072 Killed Error, command: /home/user/Bridger_r2014-12-01/src/PathSearch -i comp9396 -k 25 --pair_end --double_stranded_mode >/data/user/rna-seq/trimmed/rna-seq_all/transcripts/comp9396.transcripts.fasta died with ret 35072 terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc Aborted (core dumped)
The installation of Bridger works fine with other datasets but is failing across 3 different datasets for this particular organism.
sschrstn
commented
3 years ago
Hello,
I am getting the following errors while trying to assemble a new dataset on a system with 64 CPUs and 250 GB memory:
Error, command: /home/user/Bridger_r2014-12-01/src/PathSearch -i comp48 -k 25 --pair_end --double_stranded_mode >/data/user/rna-seq/trimmed/rna-seq_all/transcripts/comp48.transcripts.fasta died with ret 35072 Killed Error, command: /home/user/Bridger_r2014-12-01/src/PathSearch -i comp9396 -k 25 --pair_end --double_stranded_mode >/data/user/rna-seq/trimmed/rna-seq_all/transcripts/comp9396.transcripts.fasta died with ret 35072 terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc Aborted (core dumped)The installation of Bridger works fine with other datasets but is failing across 3 different datasets for this particular organism.