search

fmalmeida / MpGAP

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
https://mpgap.readthedocs.io/en/latest/
GNU General Public License v3.0
53 stars 10 forks source link

add the possibility of running directly from SRA IDs #67

Open fmalmeida opened 4 months ago

fmalmeida commented 4 months ago

Include a way to automatically download data from SRA and run the pipeline.

Bottleneck here is identifying a way so that the pipeline can fetch multiple SRAs for a single sample, in case of a hybrid assembly for example.