Assess what is required and how to implement some nice features performed in https://github.com/gbouras13/hybracter such as the coupled polishing of polypolish+pypolca which seem to work nicely in a complementary manner. Maybe the plasmid assembly step. And maybe the chr reorientation step.
Assess what is required and how to implement some nice features performed in https://github.com/gbouras13/hybracter such as the coupled polishing of polypolish+pypolca which seem to work nicely in a complementary manner. Maybe the plasmid assembly step. And maybe the chr reorientation step.
Check what and how can be done.