fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
https://bacannot.readthedocs.io/en/latest/
GNU General Public License v3.0
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Fix issues #116 #117

Closed fmalmeida closed 4 months ago

fmalmeida commented 4 months ago

This PR is a quick patch release, thus pointed directly to master, to solve issue #116 where integron_finder would sometimes generate genbank files where items start in position 0.

However, position 0 is not allowed by the perl gbk2gff converter and thus, a small sed operation was added to modify these values to 1, when happening, before the conversion.

Code was tested by reporter user and thus, it can be merged when all small checkings are done.