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fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
https://bacannot.readthedocs.io/en/latest/
GNU General Public License v3.0
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Update integron finder tool version #120

Open fmalmeida opened 7 months ago

fmalmeida commented 7 months ago

During #118 it was detected an issue in the INTEGRON FINDER tool. We opened an issue in the tool's repo, https://github.com/gem-pasteur/Integron_Finder/issues/114 Once the fix is available on a new release, the pipeline should then update the contained version of the tool in the Docker image. As a workaround, while not available, we added parameters to skip this modules.

fmalmeida commented 2 months ago

Issue on tool was fixed and closed, should now integrate this new version in the pipeline.