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fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
https://bacannot.readthedocs.io/en/latest/
GNU General Public License v3.0
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Include Phylogeny? #124

Open fmalmeida opened 3 days ago

fmalmeida commented 3 days ago

Idea here is to identify an easy, or quick way, to perform a phylogenetic analysis with input genomes.

Idea is to:

Get all input genomes. Plus the 10 closest genomes for each input. Then perform a phylogeny.

Maybe use SANS-Serif package.

Phylogeny should output an svg, a core alignment file, and result should go in the “generic html report”

fmalmeida commented 3 days ago

Relates to #30

Should get it back rolling again.