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fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
https://bacannot.readthedocs.io/en/latest/
GNU General Public License v3.0
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addition of ncbi_protein annotation module #49

Closed fmalmeida closed 2 years ago

fmalmeida commented 2 years ago

This custom module get's as input a list of protein's NCBI accession from NCBI protein database and performs a blastp against these sequences.

In summary, given the protein accs provided, the pipeline will check if any protein of the input genome is similar to them.

fmalmeida commented 2 years ago

Local tests shown that it seems to be working well ...

Now must properly document how this module works and should be used so a new release can be triggered.

fmalmeida commented 2 years ago

Only waiting for improvements in the automatic report and in the documention to merge.