Fixing error when phigaro output was empty

fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

https://bacannot.readthedocs.io/en/latest/

GNU General Public License v3.0

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Closed fmalmeida closed 2 years ago

fmalmeida commented 2 years ago

This version contains:

A fix on the custom blast report file which had an wrong ifelse statement definition
Updated version of renv docker with fixed report Rmd
Addition of checkIfExists statements when loading file to make sure that user is pointing to files that exists and did not misspelled them
A small fix on phigaro.nf module which was causing the pipeline to fail when its outputs were empty

Thanks to @fetyj for spotting these issues.