Latest updates from dev

fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

https://bacannot.readthedocs.io/en/latest/

GNU General Public License v3.0

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Latest updates from dev #74

Closed fmalmeida closed 1 year ago

fmalmeida commented 1 year ago

Include workflow to generate CIRCOS plots from main outputs
Fix problems with annotation of custom databases observed by @lam-c (#67)
Fix problem in shiny app which is not properly showing custom databases annotations (#68):
- The reports are correct and have the content properly written
- But when displayed inside the shiny app, the tables are not displayed correctly

fmalmeida commented 1 year ago

Note:

This PR may delay a little bit more because more work is still required in the CIRCOS modules in order to have better defaults to have good enough plots that users can further customise later.

fmalmeida commented 1 year ago

Hi @lam-c I tried today the pipeline with the new version of scripts, docker images and all, and that problem with custom annotations in the server is solved.

I am just wanting to finalize the pending work in the circos sub-workflow before merging. I hope I can get it merged this week.

fmalmeida commented 1 year ago

Last three steps for release: https://github.com/fmalmeida/bacannot/issues/70#issuecomment-1356852215