enhance circos plot - Githubissues

fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

https://bacannot.readthedocs.io/en/latest/

GNU General Public License v3.0

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Open fmalmeida opened 1 year ago

fmalmeida commented 1 year ago

For now the generated circos plot is very limited.

It should be enhanced with:

[ ] Possibility to add genes of different tools instead of only AMRFinderPlus and VFDB
[ ] Be able to generate plot per contig
[ ] Add the MGE sequences to the plot, for now, only PhiSpy is available
[ ] Generate a plot legend
[ ] TBD

Ticket may be updated to hold more enhancements detected.