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fmalmeida / gff-toolbox

Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
https://github.com/fmalmeida/gff-toolbox/wiki
GNU General Public License v3.0
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add a new plot (ideogram) #7

Open fmalmeida opened 2 years ago

fmalmeida commented 2 years ago

Generate a ideogram plot (with karyoploteR) using a feature type or attribute key selected by the user.

Obs: It would require a .fai (samtools faidx) or genome file as input to get the chr sizes.

fmalmeida commented 2 years ago

Already being tackled in https://github.com/fmalmeida/gff-toolbox/tree/develop develop branch.

It is already producing the plot. Just needs to update the documentation, the conda recipe and requirements, and make better defaults for the plot.

fmalmeida commented 2 years ago

This module seems almost ready. Already implements with compressed or uncompressed files. But, for now it only plots one feature at a time.

Must make this module understand more than one feature, and plot them with different colors