Closed mrshu closed 6 years ago
@Zygro anything I can help with here (so that we can close this)?
@Zygro Please let me know if I can help in any way to get this done.
Thanks!
@mrshu I didn't get enough time to do this, but i should be able to do it this weekend
I have the data, however I can't find where is the DB. MalSym wiki says that I should run hgLoadGenePred -genePredExt malSym1 augustus augustus.genePredExt
, however I have no idea in which directory as I generally get can't find database malGlo1 in hg.conf, should have a default named "db"
@Zygro just out of curiosity, did you follow this guide in order to set up your environment?
I guess it may help a bit =)
done that, track is now online
augustus --uniqueGeneId=true --species=ustilago_maydis genome.fa > augustus.gtf