Closed mrshu closed 6 years ago
@pecox anything I can help with here?
I believe, this task is done. Please check genomika.compbio.fmph.uniba.sk tracks in group Variation and Repeats.
@mrshu Is there any place, where I can add my guide for this task and where I can store my script for filtering out data?
Thanks @pecox, the best place for the guide seems to be the wiki (https://github.com/fmfi-genomika/genomikaMalGlo/wiki) -- feel free to create a new page there.
With regards to the script, I suggest you send a pull request adding it to this repository (the easiest way seems to be by uploading it via this interface: https://github.com/fmfi-genomika/genomikaMalGlo/upload/master).
Do let me know if I can be of any help!
Guide was added here: https://github.com/fmfi-genomika/genomikaMalGlo/wiki/Self-alignment Script uploaded via interface.
Added simple description.
Parts of trackDb.ra (replace magCap5 with your genome name):