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fmi-basel / faim-luigi

[WIP] utilitites for luigi workflows
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Add task for calling KNIME workflows with container inputs #3

Open imagejan opened 3 years ago

imagejan commented 3 years ago

This pull request adds a Luigi task to run KNIME workflows via knimepy, accepting tabular input from a pandas DataFrame via a Container Input node in KNIME.

For more information, see:

For the test to pass, a KNIME executable parameter has to be configured via luigi.cfg, e.g. on Mac OSX:

[DummyKnimeWorkflowTask]
knime_executable=/Applications/KNIME.app/Contents/MacOS/Knime