Cannot install with pip 24.1

[tcompa]

When cloning the repository and trying to install with python -m pip install -e ., the command suceeds for pip v24.0 but fails for pip v24.1.0 or v24.1.1.

The error traceback (see below) also says "Please use pip<24.1 if you need to use this version."

(venv) ~/gliberal-scMultipleX$ python -m pip install -U pip
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.0.2)
Collecting pip
  Using cached pip-24.1.1-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 22.0.2
    Uninstalling pip-22.0.2:
      Successfully uninstalled pip-22.0.2
Successfully installed pip-24.1.1

(venv) ~/gliberal-scMultipleX$ python -m pip install -e .
Obtaining file://~/gliberal-scMultipleX
  Installing build dependencies ... done
  Checking if build backend supports build_editable ... done
  Getting requirements to build editable ... done
  Preparing editable metadata (pyproject.toml) ... done
Collecting SimpleITK (from scmultiplex==0.6.0)
  Downloading SimpleITK-2.3.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
Collecting imagecodecs (from scmultiplex==0.6.0)
  Downloading imagecodecs-2024.6.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
Collecting matplotlib (from scmultiplex==0.6.0)
  Using cached matplotlib-3.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB)
Collecting numba (from scmultiplex==0.6.0)
  Downloading numba-0.60.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.7 kB)
Collecting numcodecs (from scmultiplex==0.6.0)
  Using cached numcodecs-0.12.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.8 kB)
Collecting numpy==1.23.5 (from scmultiplex==0.6.0)
  Downloading numpy-1.23.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
Collecting pandas (from scmultiplex==0.6.0)
  Downloading pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
Collecting prefect==1.4 (from scmultiplex==0.6.0)
  Using cached prefect-1.4.0-py3-none-any.whl.metadata (27 kB)
WARNING: Ignoring version 1.4.0 of prefect since it has invalid metadata:
Requested prefect==1.4 from https://files.pythonhosted.org/packages/19/5b/9fddf375dec274c4452a43dfa3bc637d5f8d26d0647b9ec5ae87e93848ce/prefect-1.4.0-py3-none-any.whl (from scmultiplex==0.6.0) has invalid metadata: Expected matching RIGHT_PARENTHESIS for LEFT_PARENTHESIS, after version specifier
    kubernetes (>=9.0.0a1.0) ; extra == 'all_extras'
               ~~~~~~~~~~^
Please use pip<24.1 if you need to use this version.
INFO: pip is looking at multiple versions of scmultiplex to determine which version is compatible with other requirements. This could take a while.
ERROR: Ignored the following yanked versions: 2.7.4, 2.7.5, 2.82
ERROR: Ignored the following versions that require a different python version: 0.52.0 Requires-Python >=3.6,<3.9; 0.52.0rc3 Requires-Python >=3.6,<3.9; 0.53.0 Requires-Python >=3.6,<3.10; 0.53.0rc1.post1 Requires-Python >=3.6,<3.10; 0.53.0rc2 Requires-Python >=3.6,<3.10; 0.53.0rc3 Requires-Python >=3.6,<3.10; 0.53.1 Requires-Python >=3.6,<3.10; 0.54.0 Requires-Python >=3.7,<3.10; 0.54.0rc2 Requires-Python >=3.7,<3.10; 0.54.0rc3 Requires-Python >=3.7,<3.10; 0.54.1 Requires-Python >=3.7,<3.10
ERROR: Could not find a version that satisfies the requirement prefect==1.4 (from scmultiplex) (from versions: 0.5.0, 0.5.1, 0.5.2, 0.5.3, 0.5.4, 0.5.5, 0.6.0, 0.6.1, 0.6.2, 0.6.3, 0.6.4, 0.6.5, 0.6.6, 0.6.7, 0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.8.0, 0.8.1, 0.9.0, 0.9.1, 0.9.2, 0.9.3, 0.9.4, 0.9.5, 0.9.6, 0.9.7, 0.9.8, 0.10.0, 0.10.1, 0.10.2, 0.10.3, 0.10.4, 0.10.5, 0.10.6, 0.10.7, 0.11.0, 0.11.1, 0.11.2, 0.11.3, 0.11.4, 0.11.5, 0.12.0, 0.12.1, 0.12.2, 0.12.3, 0.12.4, 0.12.5, 0.12.6, 0.13.0, 0.13.1, 0.13.2, 0.13.3, 0.13.4, 0.13.5, 0.13.6, 0.13.7, 0.13.8, 0.13.9, 0.13.10, 0.13.11, 0.13.12, 0.13.13, 0.13.14, 0.13.15, 0.13.16, 0.13.17, 0.13.18, 0.13.19, 0.14.0, 0.14.1, 0.14.2, 0.14.3, 0.14.4, 0.14.5, 0.14.6, 0.14.7, 0.14.8, 0.14.9, 0.14.10, 0.14.11, 0.14.12, 0.14.13, 0.14.14, 0.14.15, 0.14.16, 0.14.17, 0.14.18, 0.14.19, 0.14.20, 0.14.21, 0.14.22, 0.15.0, 0.15.1, 0.15.2, 0.15.3, 0.15.4, 0.15.5, 0.15.6, 0.15.7, 0.15.8, 0.15.9, 0.15.10, 0.15.11, 0.15.12, 0.15.13, 1.0rc1, 1.0.0, 1.1.0, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.2.4, 1.3.0, 1.3.1, 1.4.0, 1.4.1, 2.0a1, 2.0a2, 2.0a3, 2.0a4, 2.0a5, 2.0a6, 2.0a7, 2.0a8, 2.0a9, 2.0a10, 2.0a11, 2.0a12, 2.0a13, 2.0b1, 2.0b2, 2.0b3, 2.0b4, 2.0b5, 2.0b6, 2.0b7, 2.0b8, 2.0b9, 2.0b10, 2.0b11, 2.0b12, 2.0b13, 2.0b14, 2.0b15, 2.0b16, 2.0.0, 2.0.1, 2.0.2, 2.0.3, 2.0.4, 2.1.0, 2.1.1, 2.2.0, 2.3.0, 2.3.1, 2.3.2, 2.4.0, 2.4.1, 2.4.2, 2.4.3, 2.4.4, 2.4.5, 2.5.0, 2.6.0, 2.6.1, 2.6.2, 2.6.3, 2.6.4, 2.6.5, 2.6.6, 2.6.7, 2.6.8, 2.6.9, 2.7.0, 2.7.1, 2.7.2, 2.7.3, 2.7.6, 2.7.7, 2.7.8, 2.7.9, 2.7.10, 2.7.11, 2.7.12, 2.8.0, 2.8.1, 2.8.2, 2.8.3, 2.8.4, 2.8.5, 2.8.6, 2.8.7, 2.9.0, 2.10.0, 2.10.1, 2.10.2, 2.10.3, 2.10.4, 2.10.5, 2.10.6, 2.10.7, 2.10.8, 2.10.9, 2.10.10, 2.10.11, 2.10.12, 2.10.13, 2.10.14, 2.10.15, 2.10.16, 2.10.17, 2.10.18, 2.10.19, 2.10.20, 2.10.21, 2.11.0, 2.11.1, 2.11.2, 2.11.3, 2.11.4, 2.11.5, 2.12.0, 2.12.1, 2.13.0, 2.13.1, 2.13.2, 2.13.3, 2.13.4, 2.13.5, 2.13.6, 2.13.7, 2.13.8, 2.14.0, 2.14.1, 2.14.2, 2.14.3, 2.14.4, 2.14.5, 2.14.6, 2.14.8, 2.14.9, 2.14.10, 2.14.11, 2.14.12, 2.14.13, 2.14.14, 2.14.15, 2.14.16, 2.14.17, 2.14.18, 2.14.19, 2.14.20, 2.14.21, 2.15.0, 2.16.0, 2.16.1, 2.16.2, 2.16.3, 2.16.4, 2.16.5, 2.16.6, 2.16.7, 2.16.8, 2.16.9, 2.17.0, 2.17.1, 2.18.0, 2.18.1, 2.18.2, 2.18.3, 2.19.0, 2.19.1, 2.19.2, 2.19.3, 2.19.4, 2.19.5, 2.19.6, 3.0.0rc1, 3.0.0rc2, 3.0.0rc3, 3.0.0rc4, 3.0.0rc5, 3.0.0rc6, 3.0.0rc7, 3.0.0rc8, 3.0.0rc9)
ERROR: No matching distribution found for prefect==1.4

[jluethi]

@nrepina Is this specific prefect version required? Can we make the prefect dependency optional same as the fractal-tasks dependency (by making it an extra)? Prefect dependencies are, after all, not required for running the Fractal tasks

[nrepina]

@jluethi Yes for sure, we can separate the Prefect dependency into an extra since we no longer use it for parallelization, and indeed the Prefect tasks are by now outdated compared to the Fractal tasks.

[nrepina]

Addressed with commit #109 and v.0.6.1 release