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gliberal-scMultipleX
Feature extraction and linking of multiplexing data.
BSD 3-Clause "New" or "Revised" License
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Mesh computation, shape measurement, and spherical harmonic decomposition
#114
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nrepina
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1 month ago
nrepina
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1 month ago
Add task Surface Mesh Multiscale for generating mesh from 3D cell segmentation
Add task Spherical Harmonics from Label Image for calculating spherical harmonics and meshes from label images
Add task Mesh Measurements to calculate morphology features and spherical harmonics given an input mesh
Temporary bundle of aics_shparam with fixes for pixel anisotropy and separate task for harmonic calculation
Improve stability of multiscale mesh generation by padding array
Improve smoothing and decimation of meshes during multiscale mesh generation
Add feature functions for measuring mesh morphology (volume, surface area, extent, solidity, concavity, asymmetry, aspect ratio, and normalized surface area to volume ratio)
Add functions to calculate convex hull, bounding box, and concavity of meshes
Update documentation and integration tests for new tasks