Output euclidian distances before transformation in run_affine function

fmi-basel / gliberal-scMultipleX

Feature extraction and linking of multiplexing data.

BSD 3-Clause "New" or "Revised" License

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Output euclidian distances before transformation in run_affine function #89

Open nrepina opened 1 year ago

nrepina commented 1 year ago

Update run_affine function in NucleiLinkingFunctions to also output euclidian distances between matched nuclei before affine transformation. This allows quality control that the distance was minimized after transformation.

See cost_matrix[row_indices, col_indices] in function (euclidian_distance_pix_fixed_to_affine)