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fmi-basel / gliberal-scMultipleX

Feature extraction and linking of multiplexing data.
BSD 3-Clause "New" or "Revised" License
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Update scikit-image to 0.21.0 and add missing __init__.py #91

Closed enricotagliavini closed 1 year ago

enricotagliavini commented 1 year ago

We can disable our quirk for the buggy centroid in scikit-image 0.20.0 now that our fix got merged.

This also fixes the ordering for the nuc linking label, restoring the intended order with R0 in the first column, and RX in the second.

Please double check the centroids value. I compared to a previous run and they looked identical, but an independent check would be good.

enricotagliavini commented 1 year ago

I've also added the threading change for the nuclear linking, so it doesn't get stuck.

enricotagliavini commented 1 year ago

Removed the redundant changes, keeping the scikit 0.21.0 update only

codecov-commenter commented 1 year ago

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