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fmi-basel / gliberal-scMultipleX

Feature extraction and linking of multiplexing data.
BSD 3-Clause "New" or "Revised" License
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Optional saving of relabelled and transformed images (task 3) #93

Closed nrepina closed 9 months ago

nrepina commented 1 year ago

Add config file parameter to choose whether to save relabelled images, and whether to apply affine transform and save raw images.

Modify task 3 scripts so that relabel_RX_numpy and apply_transform functions are run only if config file parameter is set to True.