nrepina
commented
11 months ago - Add support for plotting of well overviews per condition (using well ROI tables). Note this can be easily adapted to plotting random sets of FOVs.
- Add support for reading csv file of condition per well. CSV must be within experiment directory and match plate name, with csv table layout matching plate layout. Layouts currently supported at 18-well ibidi slides and 24, 96, and 384-well plates.
- Update examples in jupyter notebook, improve clarify of user input, and improve documentation.
- Streamline running of jupyter notebook for segmented objects (object_segmentation=True) vs. well overviews via well ROI tables.
- Saving aggregated features as h5ad and classification optional.
- Minor bug fixes in plotting functions