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fmi-faim / faim-ipa

A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
BSD 3-Clause "New" or "Revised" License
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Add processors #115

Closed tibuch closed 3 weeks ago

tibuch commented 7 months ago

We can probably hide a bunch of boiler plate code by adding some form of processors.

see: https://github.com/fmi-faim/faim-hcs/tree/processors

Note: The mentioned branch is just an initial idea and most likely requires a bit more thinking.

imagejan commented 5 months ago

See also #50.

imagejan commented 3 weeks ago

Parallelization is very project-dependent. We should try to parallelize as much as possible with nextflow (or, for very small tasks, use dask inside a single nextflow process).